Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs3734528 chr6:26022244 A/G 3.93E-9 517 41.13 37.2 3.37 KM Plot
KIRC rs373899126 chr21:44302681 GA/G 5.52E-13 516 43.03 33.97 3.37 KM Plot
KIRC rs3742970 chr15:43622265 C/A 1.54E-5 514 37.95 45.17 10.97 KM Plot
KIRC rs3749005 chr2:168115325 A/G 5.57E-8 522 40.28 27.8 3.37 KM Plot
KIRC rs3752417 chr6:26045905 G/C 3.06E-9 525 41.13 33.82 3.37 KM Plot
KIRC rs375991723 chr7:2100989 TTAAAA/T 3.48E-7 523 40.28 37.7 3.37 KM Plot
KIRC rs376438866 chr11:116813898 G/GAA 7.91E-6 526 42.2 31 4.57 KM Plot
KIRC rs3764952 chr12:29501941 A/G 1.49E-7 522 40.57 39.23 5.8 KM Plot
KIRC rs3766820 chr1:33643983 C/T 6.65E-5 525 40.78 41.4 21.53 KM Plot
KIRC rs376879116 chr12:32924934 AAAGG/A 1.68E-5 523 44.05 29.27 16.05 KM Plot
KIRC rs3794172 chr11:34929056 T/C 9.33E-13 525 40.58 32.23 3.48 KM Plot
KIRC rs3797030 chr4:186335582 T/C 8.66E-7 525 3.53 39.5 39.38 KM Plot
KIRC rs3823107 chr6:2413310 A/G 5.85E-8 525 39.7 40.58 12.25 KM Plot
KIRC rs3832749 chr11:125301192 AGAG/A 7.55E-15 518 40.8 37.42 1.4 KM Plot
KIRC rs3842110 chr6:50813900 AC/A 4.42E-6 520 41 40.3 15.3 KM Plot